Title: Controlled vocabulary for ESTminer (draft version 1)

 

Authors: A. Gingle and Y. Huang

 

Date: February 4, 2006

CVTERM_ID CV_ID NAME DEFINITION DBXREF_ID IS_OBSOLETE IS_RELATIONSHIPTYPE
1 1 EST_name EST name 1 0 0
2 1 GB_access GenBank accession ID 2 0 0
3 1 GI GenBank Id 3 0 0
4 1 EST3 3' EST read 4 0 0
5 1 EST5 5' EST read 5 0 0
6 1 NT_sequence nucleotide sequence 6 0 0
7 1 scr1_offset First screened sequence offset 7 0 0
8 1 scr1_length First screened sequence length 8 0 0
9 1 scr2_offset Second screened sequence offset 9 0 0
10 1 scr2_length Second screened sequence length 10 0 0
11 1 qual16_offset Quality = 16 offset 11 0 0
12 1 qual16_length Quality = 16 length 12 0 0
13 1 qual20_offset Quality = 20 offset 13 0 0
14 1 qual20_length Quality = 20 length 14 0 0
15 1 library cDNA library 15 0 0
16 1 lib_name cDNA library name 16 0 0
17 1 lib_full_name cDNA library full name 17 0 0
18 1 lib_publish cDNA library to be published 18 0 0
19 1 lib_organism cDNA library organism 19 0 0
20 1 lib_descr cDNA library description 20 0 0
21 1 lib_organ cDNA library organ 21 0 0
22 1 lib_re_1 cDNA library restriction enzyme 1 22 0 0
23 1 lib_comment_for_EST cDNA library comment 23 0 0
24 1 lib_botanical_name cDNA library botanical name 24 0 0
25 1 lib_re2 cDNA library restriction enzyme 2 25 0 0
26 1 lib_vector cDNA library vector 26 0 0
27 1 lib_v_type cDNA library vector type 27 0 0
28 1 EST_contig_algorithm EST contigging algorithm 28 0 0
29 1 EST_contig EST contig 29 0 0
30 1 num_of_seqs number of sequences 30 0 0
31 1 alignment EST contig alignment 31 0 0
32 1 ctg1 contig position 1 32 0 0
33 1 ctg2 contig position 2 33 0 0
34 1 seq1 sequence position 1 34 0 0
35 1 seq2 sequence position 2 35 0 0
36 1 EST_cluster_algorithm EST clustering algorithm 36 0 0
37 1 EST_cluster EST cluster 37 0 0
38 1 num_of_ctgs number of contigs 38 0 0
39 1 identities_thresh identities threshold 39 0 0
40 1 length_thresh length threshold 40 0 0
41 1 imo is member of 41 0 0
42 1 ipo is part of 42 0 0
43 1 qps16_offset Quality = 16 (with Poly-A and vector screening) offset 43 0 0
44 1 qps16_length Quality = 16 (with Poly-A and vector screening) length 44 0 0
45 1 qps20_offset Quality = 20 (with Poly-A and vector screening) offset 45 0 0
46 1 qps20_length Quality = 20 (with Poly-A and vector screening) length 46 0 0
47 1 qpse16_offset Quality = 16 (with Poly-A, E. coli and vector screening) offset 47 0 0
48 1 qpse16_length Quality = 16 (with Poly-A, E. coli and vector screening) length 48 0 0
49 1 qpse20_offset Quality = 20 (with Poly-A, E. coli and vector screening) offset 49 0 0
50 1 qpse20_length Quality = 20 (with Poly-A, E. coli and vector screening) length 50 0 0
51 1 species set Species set code indicating the mix of species represented by the member ESTs 51 0 0