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Title: Controlled vocabulary for ESTminer (draft version 1) | |
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Authors: A. Gingle and Y. Huang | |
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Date: February 4, 2006 |
| CVTERM_ID | CV_ID | NAME | DEFINITION | DBXREF_ID | IS_OBSOLETE | IS_RELATIONSHIPTYPE |
|---|---|---|---|---|---|---|
| 1 | 1 | EST_name | EST name | 1 | 0 | 0 |
| 2 | 1 | GB_access | GenBank accession ID | 2 | 0 | 0 |
| 3 | 1 | GI | GenBank Id | 3 | 0 | 0 |
| 4 | 1 | EST3 | 3' EST read | 4 | 0 | 0 |
| 5 | 1 | EST5 | 5' EST read | 5 | 0 | 0 |
| 6 | 1 | NT_sequence | nucleotide sequence | 6 | 0 | 0 |
| 7 | 1 | scr1_offset | First screened sequence offset | 7 | 0 | 0 |
| 8 | 1 | scr1_length | First screened sequence length | 8 | 0 | 0 |
| 9 | 1 | scr2_offset | Second screened sequence offset | 9 | 0 | 0 |
| 10 | 1 | scr2_length | Second screened sequence length | 10 | 0 | 0 |
| 11 | 1 | qual16_offset | Quality = 16 offset | 11 | 0 | 0 |
| 12 | 1 | qual16_length | Quality = 16 length | 12 | 0 | 0 |
| 13 | 1 | qual20_offset | Quality = 20 offset | 13 | 0 | 0 |
| 14 | 1 | qual20_length | Quality = 20 length | 14 | 0 | 0 |
| 15 | 1 | library | cDNA library | 15 | 0 | 0 |
| 16 | 1 | lib_name | cDNA library name | 16 | 0 | 0 |
| 17 | 1 | lib_full_name | cDNA library full name | 17 | 0 | 0 |
| 18 | 1 | lib_publish | cDNA library to be published | 18 | 0 | 0 |
| 19 | 1 | lib_organism | cDNA library organism | 19 | 0 | 0 |
| 20 | 1 | lib_descr | cDNA library description | 20 | 0 | 0 |
| 21 | 1 | lib_organ | cDNA library organ | 21 | 0 | 0 |
| 22 | 1 | lib_re_1 | cDNA library restriction enzyme 1 | 22 | 0 | 0 |
| 23 | 1 | lib_comment_for_EST | cDNA library comment | 23 | 0 | 0 |
| 24 | 1 | lib_botanical_name | cDNA library botanical name | 24 | 0 | 0 |
| 25 | 1 | lib_re2 | cDNA library restriction enzyme 2 | 25 | 0 | 0 |
| 26 | 1 | lib_vector | cDNA library vector | 26 | 0 | 0 |
| 27 | 1 | lib_v_type | cDNA library vector type | 27 | 0 | 0 |
| 28 | 1 | EST_contig_algorithm | EST contigging algorithm | 28 | 0 | 0 |
| 29 | 1 | EST_contig | EST contig | 29 | 0 | 0 |
| 30 | 1 | num_of_seqs | number of sequences | 30 | 0 | 0 |
| 31 | 1 | alignment | EST contig alignment | 31 | 0 | 0 |
| 32 | 1 | ctg1 | contig position 1 | 32 | 0 | 0 |
| 33 | 1 | ctg2 | contig position 2 | 33 | 0 | 0 |
| 34 | 1 | seq1 | sequence position 1 | 34 | 0 | 0 |
| 35 | 1 | seq2 | sequence position 2 | 35 | 0 | 0 |
| 36 | 1 | EST_cluster_algorithm | EST clustering algorithm | 36 | 0 | 0 |
| 37 | 1 | EST_cluster | EST cluster | 37 | 0 | 0 |
| 38 | 1 | num_of_ctgs | number of contigs | 38 | 0 | 0 |
| 39 | 1 | identities_thresh | identities threshold | 39 | 0 | 0 |
| 40 | 1 | length_thresh | length threshold | 40 | 0 | 0 |
| 41 | 1 | imo | is member of | 41 | 0 | 0 |
| 42 | 1 | ipo | is part of | 42 | 0 | 0 |
| 43 | 1 | qps16_offset | Quality = 16 (with Poly-A and vector screening) offset | 43 | 0 | 0 |
| 44 | 1 | qps16_length | Quality = 16 (with Poly-A and vector screening) length | 44 | 0 | 0 |
| 45 | 1 | qps20_offset | Quality = 20 (with Poly-A and vector screening) offset | 45 | 0 | 0 |
| 46 | 1 | qps20_length | Quality = 20 (with Poly-A and vector screening) length | 46 | 0 | 0 |
| 47 | 1 | qpse16_offset | Quality = 16 (with Poly-A, E. coli and vector screening) offset | 47 | 0 | 0 |
| 48 | 1 | qpse16_length | Quality = 16 (with Poly-A, E. coli and vector screening) length | 48 | 0 | 0 |
| 49 | 1 | qpse20_offset | Quality = 20 (with Poly-A, E. coli and vector screening) offset | 49 | 0 | 0 |
| 50 | 1 | qpse20_length | Quality = 20 (with Poly-A, E. coli and vector screening) length | 50 | 0 | 0 |
| 51 | 1 | species set | Species set code indicating the mix of species represented by the member ESTs | 51 | 0 | 0 |