Resource

URL

Overall RDB

http://csgr.agtec.uga.edu

Includes links to help guide utilization of the db, as well as to download genetic map locations, diversity data, physical map data, EST sequence trace files, quality scores, unigene file sets, and  SORGHUM COMMUNITY NEEDS SURVEY!

Sorghum Significance

http://csgr.agtec.uga.edu/Data/SorgSig.asp

Downloads from RDB

http://csgr.agtec.uga.edu/Data/download.asp

Includes map data, diversity data, sequence trace files, unigene file sets,

sorghum community survey, sequence viewer, ESTMiner, IMAP programs

Integrated genetic-physical-diversity map

http://csgr.agtec.uga.edu/Mapdisplay/Mainpage.aspx

Clone requests

S. bicolor BACs

http://www.genome.clemson.edu/cgi-bin/orders?&page= productGroup&service=bacrc&productGroup=26

Sugarcane BACs

http://www.genome.clemson.edu/cgi-bin/orders?&page= productGroup&service=bacrc&productGroup=68

S. propinquum BACs

Email request to paterson@uga.edu

Mapped probes

Email request to paterson@uga.edu

(also sequences in Genbank, see Bowers et al 2003)

EST clones

http://www.fungen.org/Projects/Sorghum/Clone%20requests.htm

SSR and SNP data

http://igd.tc.cornell.edu/home.aspx

Genetic map:

Synteny (queryable)

Sorghum-sorghum

http://www.plantgenome.uga.edu/sorghummap

Sorghum-maize

http://www.plantgenome.uga.edu/dbMaizeSorgDup/form.php?&table_name= maizeSorgDup&function=search&sql=+where+intersection++=+'1B'

Sorghum-rice

http://www.pnas.org/cgi/content/full/0307901101/DC1? maxtoshow=&HITS=10&hits=10&RESULTFORMAT=&fulltext=Paterson& searchid=1096829386198_2082&stored_search=&FIRSTINDEX=0

Probe sequences, etc

http://www.plantgenome.uga.edu/sorghummap/

BLAST of probes

http://www.plantgenome.uga.edu/sorghummap/

PFAM of probes

http://www.plantgenome.uga.edu/sorghummap/

Gramene deposit

http://dev.gramene.org/db/cmap/map_set_info?map_set_aid=patt2003

BAC data:

WebFPC

http://www.stardaddy.uga.edu/fpc/WebAGCoL/propinquum/

http://www.stardaddy.uga.edu/fpc/WebAGCoL/bicolor/

BAC fingerprint data

ftp://cggc.agtec.uga.edu/SorghumFpc/

BAC hyb data, all species, for download

http://www.plantgenome.uga.edu/bacman/BACManwww.php

BACMAN software download

http://www.plantgenome.uga.edu/cotton/Software/BACMan.htm

Our lab web sites

Paterson, Bowers, Feltus, Marler

http://www.plantgenome.uga.edu/

Kresovich, Casa, Hamblin

http://www.igd.cornell.edu/Staff/Kresovich.html

Peterson

http://www.mgel.msstate.edu/

Rokhsar

http://www.jgi.doe.gov/

Franks

http://www.ars.usda.gov/pandp/people/people.htm?personid=36020

Rooney

http://ipgb.tamu.edu/bios/william_rooney.html

Tuinstra

http://www.oznet.ksu.edu/agronomy/people/facultypage.asp?facID=drmitch